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Spinning Tales About the Bacterial Flagellum

Download the Complete “Truth or Dare” with Dr. Ken Miller Lecture Guide

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Links to our 7-Part Series Responding to Ken Miller:

Part 1: Science and Religion: Is Evolution “Random and Undirected”?
Part 2: Misrepresenting the Definition of Intelligent Design
Part 3: Confusing Evidence for Common Ancestry With Evidence for Darwinian Evolution
Part 4: The Name-Dropping Approach to Transitional Fossils
Part 5 (This Article): Spinning Tales About the Bacterial Flagellum
Part 6: Misrepresenting Michael Behe’s Arguments for Irreducible Complexity of the Blood Clotting Cascade
Part 7: Ken Miller and the Evolution of the Immune System: “Not Good Enough”?

Ken Miller has been making the same objections about irreducible complexity and the bacterial flagellum for a long time. In his Dover testimony, his book Only a Theory, and in other writings he argues that irreducible complexity for the flagellum is refuted because about 10 flagellar proteins can also be used to construct a toxin-injection machine (called the Type-III Secretory System, or T3SS) that some predatory bacteria use to kill other cells. Miller may even boast that Judge Jones ruled that the T3SS explained how the bacterial flagellum could evolve: “[W]ith regard to the bacterial flagellum, Dr. Miller pointed to peer-reviewed studies that identified a possible precursor to the bacterial flagellum, a subsystem that was fully functional, namely the Type-III Secretory System.”33

However, there are strong reasons to doubt these hypotheses.

First, leading biologists argue that phylogenetic data implies the T3SS could not have been a precursor to the flagellum.34 As New Scientist reported:

One fact in favour of the flagellum-first view is that bacteria would have needed propulsion before they needed T3SSs, which are used to attack cells that evolved later than bacteria. Also, flagella are found in a more diverse range of bacterial species than T3SSs. “The most parsimonious explanation is that the T3SS arose later,” says biochemist Howard Ochman at the University of Arizona in Tucson.35

Second, the T3SS is composed of only about ¼ of the proteins in the flagellum, and does not help one account for how the fundamental function of the flagellum–its propulsion system–evolved. The unresolved challenge that the irreducible complexity of the flagellum continues to pose for Darwinian evolution is starkly summarized by William Dembski: “At best the T[3]SS represents one possible step in the indirect Darwinian evolution of the bacterial flagellum. But that still wouldn’t constitute a solution to the evolution of the bacterial flagellum. What’s needed is a complete evolutionary path and not merely a possible oasis along the way. To claim otherwise is like saying we can travel by foot from Los Angeles to Tokyo because we’ve discovered the Hawaiian Islands. Evolutionary biology needs to do better than that.”36

Dembski’s critique is apt because it recognizes that Miller wrongly characterizes irreducible complexity as focusing on the non-functionality of sub-parts. In contrast, Behe properly tests irreducible complexity by assessing the plausibility of the entire functional system to assemble in a step-wise fashion, even if sub-parts can have functions outside of the final system. The “leap” required by going from one functional sub-part to the entire functional system is indicative of the degree of irreducible complexity in a system. Contrary to Miller’s assertions, Behe never argued that irreducible complexity mandates that sub-parts can have no function outside of the final system.

Miller misconstrued the proper way of testing irreducible complexity, and his argument amounts to this: if my laptop’s power cord could also be used to power my toaster, then my laptop is no longer irreducibly complex. Because a laptop requires a number of parts necessary for function, this is preposterous. So is Dr. Miller’s straw method of testing irreducible complexity, as illustrated in the following 2 diagrams:

Figure A: Consider an irreducibly complex functional arch, divided up into many pieces, including s and t:
Figure A. An Irreducibly Complex Arch
Figure B: Take away the keystone of the arch, t, and the arch falls down. But piece s may be left standing:
Figure A. Arch Destroyed When Keystone RemovedDoes the fact that part of the arch, s, remains standing imply that the rest of the arch is not irreducibly complex? Of course not. In the same way, the fact that a fraction of the flagellum helps form a T3SS does not imply that the flagellum itself is not irreducibly complex. To refute irreducible complexity, Dr. Miller would have to show how a fully functional flagellum could form in a step-by-step fashion. He hasn’t shown anything close to that.

In contrast, pro-ID microbiologist Scott Minnich has properly tested for irreducible complexity through genetic knock-out experiments he performed in his own laboratory at the University of Idaho. He presented this evidence during the Dover trial, which showed that the bacterial flagellum is irreducibly complex with respect to its complement of thirty-five genes. As Minnich testified: “One mutation, one part knock out, it can’t swim. Put that single gene back in we restore motility. Same thing over here. We put, knock out one part, put a good copy of the gene back in, and they can swim. By definition the system is irreducibly complex. We’ve done that with all 35 components of the flagellum, and we get the same effect.”37

Moreover, Scott Minnich explained that even if Miller’s speculative scenario turned out to be true, it would not be sufficient to prove a Darwinian explanation for the origin of the flagellum because there is still a huge leap in complexity from a T3SS to a flagellum. Unfortunately, Judge Jones ignored Scott Minnich’s research and testimony supporting irreducible complexity of the flagellum, and instead ruled that Miller refuted the irreducible complexity of the flagellum. Ironically, a review article in Nature Reviews Microbiology the following year admitted that “the flagellar research community has scarcely begun to consider how these systems have evolved.”38 Did Miller actually demonstrate the flagellum could have evolved by Darwinian evolution?

G. Truth or Dare: Why does Dr. Miller promote an improper way of testing for irreducible complexity and misconstrue Behe’s theories as prohibiting the use of sub-parts in other systems? Has Dr. Miller actually provided anything close to a complete evolutionary pathway for the origin of the flagellum? Has anyone done this? How does Miller’s evidence refute Scott Minnich’s genetic knockout experiments which show the flagellum is irreducibly complex with respect to its complement of about 35 genes?

[Editor’s Note: Ken Miller speaks regularly on intelligent design (ID), and for years has repeatedly promoted the same misrepresentations of ID when speaking on the topic. This is Part 5 of a series of 7 posts that comprise a lecture guide for those listening to lectures by Dr. Miller against ID. When this series is complete, the entire lecture guide will be released as a single document.]

References Cited:
[33.] Kitzmiller v. Dover ruling, p. 76
[34.] See Milton H. Saier, Jr., “Evolution of Bacterial Type III Protein Secretion Systems,” Trends in Microbiology 113:12 (2004).
[35.] Dan Jones, “Uncovering the evolution of the bacterial flagellum,” New Scientist (Feb 16, 2008).
[36.] Dembski, Rebuttal to Reports by Opposing Expert Witnesses, p. 52
[37.] Day 20 PM Testimony, pp. 107-108.
[38.] Pallen & Matzke, “From The Origin of Species to the Origin of Bacterial Flagella,” Nat. Revs. Microbiology, Vol. 4:788 (2006).


Casey Luskin

Associate Director, Center for Science and Culture
Casey Luskin is a geologist and an attorney with graduate degrees in science and law, giving him expertise in both the scientific and legal dimensions of the debate over evolution. He earned his PhD in Geology from the University of Johannesburg, and BS and MS degrees in Earth Sciences from the University of California, San Diego, where he studied evolution extensively at both the graduate and undergraduate levels. His law degree is from the University of San Diego, where he focused his studies on First Amendment law, education law, and environmental law.



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