“Junk DNA” and the Molecular Basis of Cell Identity

Once thought to be “junk,” or functionless vestiges of once-protein-coding-genes which have, through the course of evolutionary history, mutated to a state of non-functionality, the research documents that these lincRNAs have an extremely important — even crucial — role with respect to the determination of cellular identity.

Does Gene Duplication Perform As Advertised?

In my previous post, I highlighted a recent peer-reviewed paper which challenged a key tenet of neo-Darwinian evolution — specifically, the causal sufficiency of gene duplication and subsequent divergence to account for the origin of novel biological information. In this follow-up blog, I want to consider some of the case-studies examined in the paper and relay some of the conclusions drawn.

Is “Pseudogene” a Misnomer?

The term “pseudogene” may be as inappropriate as the term “junk DNA,” according to the entry on pseudogenes in the 2010 Encyclopedia of Life Sciences, published by prestigious the academic publisher John Wiley & Sons. Written by researchers Ondrej Podlaha and Jianzhi Zhang at UC Davis and the University of Michigan, Ann Arbor, respectively, the entry includes a subjection titled “Difficulty with the Pseudogene Definition,” and it states that the discovery of multiple functional pseudogenes should negate the standard presumption that pseudogenes are functionless junk DNA: The term ‘pseudogene’ was originally coined to describe a degenerated RNA- or protein-coding sequence that is incapable of being transcribed or translated into functional RNA or protein products. The key in this definition is Read More ›

Subtle-But Important-Functions of Junk-DNA

The December 17, 2010 issue of Science has yet another article explaining why the concept of “junk”-DNA should no longer be given much credence: It used to seem so straightforward. DNA told the body how to build proteins. The instructions came in chapters called genes. Strands of DNA’s chemical cousin RNA served as molecular messengers, carrying orders to the cells’ protein factories and translating them into action. Between the genes lay long stretches of “junk DNA,” incoherent, useless, and inert. That was then. In fact, gene regulation has turned out to be a surprisingly complex process governed by various types of regulatory DNA, which may lie deep in the wilderness of supposed “junk.” Far from being humble messengers, RNAs of Read More ›